Corynebacterium afermentans
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinobacteria; o__Mycobacteriales; f__Mycobacteriaceae; g__Corynebacterium; s__Corynebacterium afermentans
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Corynebacteriaceae; g__Corynebacterium; s__Corynebacterium afermentans
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Corynebacteriaceae; g__Corynebacterium; s__Corynebacterium afermentans; sb__Corynebacterium afermentans subsp. afermentans
NCBI Strain Identifiers LCDC880199
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 97.32%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 24
N50 Contigs 187,988 bp
Longest Contig 316,264 bp
Scaffold Count 24
N50 Scaffolds 187,988 bp
Longest Scaffold 316,264 bp
Genome Size 2,345,615 bp
Protein Count 2,188
Coding Density 91.31%
GC Percentage 64.85%
Ambiguous Bases 0
GTDB representative GCF_900156035.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM163902v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04893626
Country Canada: Newfoundland
Date 2016-5-4
Genbank Assembly Accession GCA_001639025.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 0
Protein Count 2,174
Refseq Category na
Seq Rel Date 2016/05/04
Spanned Gaps 0
Species Taxid 38286
SSU Count 1
Submitter Public Health Agency of Canada
Taxid 144183
Total Gap Length 0
Translation Table 11
tRNA Count (total) 52
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LXGG00000000.1