Erythrobacter_A citreus
Isolate MQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Erythrobacter_A; s__Erythrobacter_A citreus
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Erythrobacteraceae; g__Erythrobacter; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Erythrobacteraceae; g__Erythrobacter; s__Erythrobacter sp. HI0028
NCBI Strain Identifiers HI0028
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001235865.1)
Genome Characteristics
CheckM Completeness 99.33%
CheckM Contamination 7.28%
CheckM Strain Heterogeneity 81.58
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 610
N50 Contigs 12,790 bp
Longest Contig 40,850 bp
Scaffold Count 610
N50 Scaffolds 12,790 bp
Longest Scaffold 40,850 bp
Genome Size 3,308,918 bp
Protein Count 3,666
Coding Density 90.96%
GC Percentage 64.01%
Ambiguous Bases 44
GTDB representative GCA_001235865.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM163479v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04580766
Country Pacific Ocean: near Hawaii
Date 2016-5-2
Genbank Assembly Accession GCA_001634795.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sea water
Latitude Longitude 22.7782 N 158.0695 W
Molecule Count N/A
CDS Count 3,549
Refseq Category na
Seq Rel Date 2016/05/02
Spanned Gaps 0
Species Taxid 1822227
SSU Count 1
Submitter Massachusetts Institute of Technology
Taxid 1822227
Total Gap Length 0
Translation Table 11
tRNA Count (total) 49
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LWES00000000.1