Pseudomonas aeruginosa
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas aeruginosa
NCBI Strain Identifiers RNS_PAE05
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457615.1)
Genome Characteristics
CheckM Completeness 99.68%
CheckM Contamination 0.78%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 178
N50 Contigs 92,826 bp
Longest Contig 426,635 bp
Scaffold Count 175
N50 Scaffolds 99,775 bp
Longest Scaffold 426,635 bp
Genome Size 7,042,944 bp
Protein Count 6,621
Coding Density 89.30%
GC Percentage 65.91%
Ambiguous Bases 2
GTDB representative GCA_001457615.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM162398v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04038440
Country Australia: Sydney
Date 2016-4-19
Genbank Assembly Accession GCA_001623985.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Hospital ward
Latitude Longitude 33.822 S 151.191 E
Molecule Count N/A
CDS Count 6,817
Refseq Category na
Seq Rel Date 2016/04/19
Spanned Gaps 3
Species Taxid 287
SSU Count 1
Submitter i3 Institute
Taxid 287
Total Gap Length 327
Translation Table 11
tRNA Count (total) 59
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LSZT00000000.1