Pseudomonas_E syringae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E syringae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas syringae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; x__Pseudomonas syringae group genomosp. 1; s__Pseudomonas syringae; x__Pseudomonas syringae pv. syringae
NCBI Strain Identifiers MB03
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000507185.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.5%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 76
N50 Contigs 207,948 bp
Longest Contig 540,632 bp
Scaffold Count 76
N50 Scaffolds 207,948 bp
Longest Scaffold 540,632 bp
Genome Size 5,777,225 bp
Protein Count 5,025
Coding Density 88.48%
GC Percentage 59.03%
Ambiguous Bases N/A
GTDB representative GCA_000507185.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM162341v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03418705
Country China: Wuhan
Date 2016-4-19
Genbank Assembly Accession GCA_001623415.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source frost damaged plant
Latitude Longitude None
Molecule Count N/A
CDS Count 5,169
Refseq Category na
Seq Rel Date 2016/04/19
Spanned Gaps 0
Species Taxid 317
SSU Count 1
Submitter Huazhong Agricultural University
Taxid 321
Total Gap Length 0
Translation Table 11
tRNA Count (total) 53
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LAGV00000000.1