Pseudovibrio sp900143565
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Stappiaceae; g__Pseudovibrio; s__Pseudovibrio sp900143565
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Pseudovibrio; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Pseudovibrio; s__Pseudovibrio sp. Ad14
NCBI Strain Identifiers Ad14
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900143565.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.35%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 57
N50 Contigs 428,966 bp
Longest Contig 710,447 bp
Scaffold Count 57
N50 Scaffolds 428,966 bp
Longest Scaffold 710,447 bp
Genome Size 6,201,736 bp
Protein Count 5,714
Coding Density 86.55%
GC Percentage 51.25%
Ambiguous Bases N/A
GTDB representative GCA_900143565.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM162324v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04147118
Country Ireland: Lough Hyne
Date 2016-4-19
Genbank Assembly Accession GCA_001623245.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source marine sponge
Latitude Longitude None
Molecule Count N/A
CDS Count 5,623
Refseq Category na
Seq Rel Date 2016/04/19
Spanned Gaps 0
Species Taxid 989397
SSU Count 1
Submitter University College Cork
Taxid 989397
Total Gap Length 0
Translation Table 11
tRNA Count (total) 59
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LMCD00000000.1