Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Nocardia; s__Nocardia aobensis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Nocardiaceae; g__Nocardia; s__Nocardia violaceofusca
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Nocardiaceae; g__Nocardia; s__Nocardia violaceofusca; x__Nocardia violaceofusca NBRC 14427
NCBI Strain Identifiers NBRC 14427
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000308375.1)
Genome Characteristics
CheckM Completeness 98.96%
CheckM Contamination 0.5%
CheckM Strain Heterogeneity 10.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 77
N50 Contigs 183,867 bp
Longest Contig 504,073 bp
Scaffold Count 77
N50 Scaffolds 183,867 bp
Longest Scaffold 504,073 bp
Genome Size 7,505,823 bp
Protein Count 6,853
Coding Density 89.93%
GC Percentage 68.04%
Ambiguous Bases N/A
GTDB representative GCA_000308375.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM161352v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00018772
Country None
Date 2016-4-1
Genbank Assembly Accession GCA_001613525.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 6,772
Refseq Category na
Seq Rel Date 2016/04/01
Spanned Gaps 0
Species Taxid 941182
SSU Count 1
Submitter National Institute of Technology and Evaluation
Taxid 1223550
Total Gap Length 0
Translation Table 11
tRNA Count (total) 49
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master BDCN00000000.1