Nocardia rhamnosiphila
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Nocardia; s__Nocardia rhamnosiphila
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Nocardiaceae; g__Nocardia; s__Nocardia rhamnosiphila
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Nocardiaceae; g__Nocardia; s__Nocardia rhamnosiphila; x__Nocardia rhamnosiphila NBRC 108938
NCBI Strain Identifiers NBRC 108938
GTDB Type Material Designation type strain of species
GTDB Representative of Species False (representative is GCA_000720425.1)
Genome Characteristics
CheckM Completeness 99.29%
CheckM Contamination 1.41%
CheckM Strain Heterogeneity 5.56
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 120
N50 Contigs 184,444 bp
Longest Contig 713,740 bp
Scaffold Count 120
N50 Scaffolds 184,444 bp
Longest Scaffold 713,740 bp
Genome Size 7,749,274 bp
Protein Count 7,098
Coding Density 88.27%
GC Percentage 68.42%
Ambiguous Bases N/A
GTDB representative GCA_000720425.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM161348v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00040664
Country None
Date 2016-4-1
Genbank Assembly Accession GCA_001613485.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 7,006
Refseq Category na
Seq Rel Date 2016/04/01
Spanned Gaps 0
Species Taxid 426716
SSU Count 1
Submitter National Institute of Technology and Evaluation
Taxid 1223547
Total Gap Length 0
Translation Table 11
tRNA Count (total) 49
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master BDCL00000000.1