Pseudomonas aeruginosa
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas aeruginosa
NCBI Strain Identifiers 105738
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457615.1)
Genome Characteristics
CheckM Completeness 99.68%
CheckM Contamination 0.11%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 139
N50 Contigs 102,664 bp
Longest Contig 311,867 bp
Scaffold Count 137
N50 Scaffolds 102,664 bp
Longest Scaffold 311,867 bp
Genome Size 6,783,146 bp
Protein Count 6,267
Coding Density 89.30%
GC Percentage 66.06%
Ambiguous Bases 2
GTDB representative GCA_001457615.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM160159v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03076167
Country USA:Fort Sam Houston
Date 2016-3-29
Genbank Assembly Accession GCA_001601595.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source chest tube
Latitude Longitude 29.46 N 98.41 W
Molecule Count N/A
CDS Count 6,435
Refseq Category na
Seq Rel Date 2016/03/29
Spanned Gaps 2
Species Taxid 287
SSU Count 1
Submitter Miami University
Taxid 287
Total Gap Length 305
Translation Table 11
tRNA Count (total) 59
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LOHK00000000.1