Pseudomonas aeruginosa
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas aeruginosa
NCBI Strain Identifiers 105880
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457615.1)
Genome Characteristics
CheckM Completeness 99.35%
CheckM Contamination 0.43%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 90
N50 Contigs 215,191 bp
Longest Contig 674,254 bp
Scaffold Count 86
N50 Scaffolds 215,191 bp
Longest Scaffold 674,254 bp
Genome Size 6,914,271 bp
Protein Count 6,482
Coding Density 89.25%
GC Percentage 65.98%
Ambiguous Bases N/A
GTDB representative GCA_001457615.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM160158v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03069734
Country USA:Fort Sam Houston
Date 2016-3-29
Genbank Assembly Accession GCA_001601585.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source thigh
Latitude Longitude 29.46 N 98.41 W
Molecule Count N/A
CDS Count 6,691
Refseq Category na
Seq Rel Date 2016/03/29
Spanned Gaps 4
Species Taxid 287
SSU Count 1
Submitter Miami University
Taxid 287
Total Gap Length 329
Translation Table 11
tRNA Count (total) 56
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LOHI00000000.1