Cupriavidus nantongensis
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Cupriavidus; s__Cupriavidus nantongensis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Cupriavidus; s__Cupriavidus nantongensis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Cupriavidus; s__Cupriavidus nantongensis
NCBI Strain Identifiers X1
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (3 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.94%
CheckM Contamination 0.32%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 5
23S Count 5
tRNA Count 19
Contig Count 5
N50 Contigs 1,739,799 bp
Longest Contig 2,456,269 bp
Scaffold Count 3
N50 Scaffolds 4,619,440 bp
Longest Scaffold 4,619,440 bp
Genome Size 7,136,420 bp
Protein Count 6,485
Coding Density 88.08%
GC Percentage 66.72%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Chromosome
Assembly Name ASM159805v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04566111
Country China:nantong;Jiangsu Province
Date 2016-3-28
Genbank Assembly Accession GCA_001598055.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source isolated from sludge collected at the drain outlet of a chlorpyrifos manufacture plant
Latitude Longitude None
Molecule Count 3
CDS Count 6,484
Refseq Category na
Seq Rel Date 2016/03/28
Spanned Gaps 2
Species Taxid 1796606
SSU Count 5
Submitter Beijing Novogene Bioinformatics Technology Co., Ltd
Taxid 1796606
Total Gap Length 40
Translation Table 11
tRNA Count (total) 57
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master None