Aeromonas salmonicida
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Aeromonadaceae; g__Aeromonas; s__Aeromonas salmonicida
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Aeromonadales; f__Aeromonadaceae; g__Aeromonas; s__Aeromonas salmonicida
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Aeromonadales; f__Aeromonadaceae; g__Aeromonas; s__Aeromonas salmonicida; sb__Aeromonas salmonicida subsp. salmonicida
NCBI Strain Identifiers JF3791
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 10
16S Count 4
23S Count 4
tRNA Count 20
Contig Count 111
N50 Contigs 115,641 bp
Longest Contig 382,726 bp
Scaffold Count 111
N50 Scaffolds 115,641 bp
Longest Scaffold 382,726 bp
Genome Size 4,730,374 bp
Protein Count 4,564
Coding Density 86.31%
GC Percentage 58.46%
Ambiguous Bases 0
GTDB representative GCF_001643305.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM159789v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03332968
Country Switzerland
Date 2016-5-6
Genbank Assembly Accession GCA_001597895.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sick fish
Latitude Longitude None
Molecule Count 5
Protein Count 4,434
Refseq Category na
Seq Rel Date 2016/05/06
Spanned Gaps 0
Species Taxid 645
SSU Count 8
Submitter Universite Laval
Taxid 29491
Total Gap Length 0
Translation Table 11
tRNA Count (total) 106
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JYFG00000000.1