Caldimonas manganoxidans
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Caldimonas; s__Caldimonas manganoxidans
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Comamonadaceae; g__Caldimonas; s__Caldimonas taiwanensis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Comamonadaceae; g__Caldimonas; s__Caldimonas taiwanensis; x__Caldimonas taiwanensis NBRC 104434
NCBI Strain Identifiers NBRC 104434
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000381125.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.93%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 98
N50 Contigs 187,947 bp
Longest Contig 339,291 bp
Scaffold Count 98
N50 Scaffolds 187,947 bp
Longest Scaffold 339,291 bp
Genome Size 3,448,805 bp
Protein Count 3,274
Coding Density 92.48%
GC Percentage 65.95%
Ambiguous Bases N/A
GTDB representative GCA_000381125.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM159216v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00047218
Country None
Date 2016-3-4
Genbank Assembly Accession GCA_001592165.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,244
Refseq Category na
Seq Rel Date 2016/03/04
Spanned Gaps 0
Species Taxid 307483
SSU Count 1
Submitter National Institute of Technology and Evaluation
Taxid 1349753
Total Gap Length 0
Translation Table 11
tRNA Count (total) 42
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master BCWK00000000.1