Streptococcus oralis_AB
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus oralis_AB
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus oralis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus oralis
NCBI Strain Identifiers JPIIBV3
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.87%
CheckM Contamination 0.27%
CheckM Strain Heterogeneity 50.0
5S Count 3
16S Count 3
23S Count 2
tRNA Count 20
Contig Count 74
N50 Contigs 209,178 bp
Longest Contig 470,303 bp
Scaffold Count 74
N50 Scaffolds 209,178 bp
Longest Scaffold 470,303 bp
Genome Size 1,989,687 bp
Protein Count 1,922
Coding Density 88.93%
GC Percentage 41.00%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM158864v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03480681
Country USA
Date 2016-3-11
Genbank Assembly Accession GCA_001588645.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source dental plaque
Latitude Longitude 35.2 N 97.4 W
Molecule Count N/A
CDS Count 1,968
Refseq Category na
Seq Rel Date 2016/03/11
Spanned Gaps 0
Species Taxid 1303
SSU Count 1
Submitter University of Malaya
Taxid 1303
Total Gap Length 0
Translation Table 11
tRNA Count (total) 46
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LAYF00000000.1