Pseudomonas_E asiatica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E asiatica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas sp. ABFPK
NCBI Strain Identifiers ABFPK
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000510285.1)
Genome Characteristics
CheckM Completeness 99.87%
CheckM Contamination 1.31%
CheckM Strain Heterogeneity 18.75
5S Count 6
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 91
N50 Contigs 203,783 bp
Longest Contig 454,444 bp
Scaffold Count 91
N50 Scaffolds 203,783 bp
Longest Scaffold 454,444 bp
Genome Size 6,219,044 bp
Protein Count 5,782
Coding Density 87.43%
GC Percentage 62.15%
Ambiguous Bases N/A
GTDB representative GCA_000510285.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM158676v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03455978
Country USA
Date 2016-3-10
Genbank Assembly Accession GCA_001586765.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude 38.984652 N 77.094709 W
Molecule Count N/A
CDS Count 5,849
Refseq Category na
Seq Rel Date 2016/03/10
Spanned Gaps 0
Species Taxid 1636605
SSU Count 9
Submitter NHGRI
Taxid 1636605
Total Gap Length 0
Translation Table 11
tRNA Count (total) 70
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LQXW00000000.1