Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 17 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers CLG10
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.81%
CheckM Contamination 0.21%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 17
Contig Count 116
N50 Contigs 48,174 bp
Longest Contig 184,757 bp
Scaffold Count 75
N50 Scaffolds 78,195 bp
Longest Scaffold 343,853 bp
Genome Size 2,019,045 bp
Protein Count 2,033
Coding Density 86.08%
GC Percentage 39.72%
Ambiguous Bases N/A
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM158548v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03946401
Country Canada: Calgary
Date 2016-3-10
Genbank Assembly Accession GCA_001585485.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source blood
Latitude Longitude None
Molecule Count N/A
CDS Count 2,207
Refseq Category na
Seq Rel Date 2016/03/10
Spanned Gaps 41
Species Taxid 1313
SSU Count 1
Submitter University of Toronto
Taxid 1313
Total Gap Length 729
Translation Table 11
tRNA Count (total) 36
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LJLY00000000.1