Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers CLG5
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.39%
CheckM Contamination 0.21%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 3
23S Count 2
tRNA Count 20
Contig Count 96
N50 Contigs 49,025 bp
Longest Contig 176,974 bp
Scaffold Count 96
N50 Scaffolds 49,025 bp
Longest Scaffold 176,974 bp
Genome Size 1,977,889 bp
Protein Count 2,006
Coding Density 86.08%
GC Percentage 39.85%
Ambiguous Bases N/A
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM158540v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03946396
Country Canada: Calgary
Date 2016-3-10
Genbank Assembly Accession GCA_001585405.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source blood
Latitude Longitude None
Molecule Count N/A
CDS Count 2,153
Refseq Category na
Seq Rel Date 2016/03/10
Spanned Gaps 0
Species Taxid 1313
SSU Count 3
Submitter University of Toronto
Taxid 1313
Total Gap Length 0
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LJMR00000000.1