Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers MT39
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.81%
CheckM Contamination 0.21%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 107
N50 Contigs 46,485 bp
Longest Contig 213,202 bp
Scaffold Count 69
N50 Scaffolds 73,005 bp
Longest Scaffold 407,457 bp
Genome Size 2,008,047 bp
Protein Count 2,001
Coding Density 85.80%
GC Percentage 39.64%
Ambiguous Bases N/A
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM158532v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03946391
Country Canada: Manitoba
Date 2016-3-10
Genbank Assembly Accession GCA_001585325.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,188
Refseq Category na
Seq Rel Date 2016/03/10
Spanned Gaps 38
Species Taxid 1313
SSU Count 1
Submitter University of Toronto
Taxid 1313
Total Gap Length 1074
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LJLS00000000.1