Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers MT6
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.81%
CheckM Contamination 0.21%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 67
N50 Contigs 94,045 bp
Longest Contig 438,957 bp
Scaffold Count 67
N50 Scaffolds 94,045 bp
Longest Scaffold 438,957 bp
Genome Size 2,008,324 bp
Protein Count 2,013
Coding Density 86.22%
GC Percentage 39.65%
Ambiguous Bases N/A
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM158481v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03946358
Country Canada: Manitoba
Date 2016-3-10
Genbank Assembly Accession GCA_001584815.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,184
Refseq Category na
Seq Rel Date 2016/03/10
Spanned Gaps 0
Species Taxid 1313
SSU Count 1
Submitter University of Toronto
Taxid 1313
Total Gap Length 0
Translation Table 11
tRNA Count (total) 43
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LJKP00000000.1