Collimonas fungivorans
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Collimonas; s__Collimonas fungivorans
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Oxalobacteraceae; g__Collimonas; s__Collimonas fungivorans
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Oxalobacteraceae; g__Collimonas; s__Collimonas fungivorans
NCBI Strain Identifiers Ter6
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.87%
CheckM Contamination 0.52%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 3
23S Count 3
tRNA Count 20
Contig Count 1
N50 Contigs 5,599,729 bp
Longest Contig 5,599,729 bp
Scaffold Count 1
N50 Scaffolds 5,599,729 bp
Longest Scaffold 5,599,729 bp
Genome Size 5,599,729 bp
Protein Count 4,967
Coding Density 88.21%
GC Percentage 58.99%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM158414v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04195674
Country Netherlands: Terschelling
Date 2016-3-9
Genbank Assembly Accession GCA_001584145.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Dune grassland
Latitude Longitude None
Molecule Count 1
CDS Count 4,946
Refseq Category na
Seq Rel Date 2016/03/09
Spanned Gaps 0
Species Taxid 158899
SSU Count 3
Submitter Netherlands Institute of Ecology
Taxid 158899
Total Gap Length 0
Translation Table 11
tRNA Count (total) 53
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master None