Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium avium
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium avium
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium avium complex (MAC); s__Mycobacterium avium; sb__Mycobacterium avium subsp. hominissuis
NCBI Strain Identifiers MAH-P-10091-06
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000174035.1)
Genome Characteristics
CheckM Completeness 99.94%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 100.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 203
N50 Contigs 60,013 bp
Longest Contig 185,532 bp
Scaffold Count 170
N50 Scaffolds 73,763 bp
Longest Scaffold 279,593 bp
Genome Size 5,158,387 bp
Protein Count 4,960
Coding Density 91.21%
GC Percentage 69.17%
Ambiguous Bases N/A
GTDB representative GCA_000174035.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM158354v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04208087
Country Germany
Date 2016-3-8
Genbank Assembly Accession GCA_001583545.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,956
Refseq Category na
Seq Rel Date 2016/03/08
Spanned Gaps 33
Species Taxid 1764
SSU Count 1
Submitter Robert Koch Institute
Taxid 439334
Total Gap Length 660
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LNAV00000000.1