Legionella pneumophila
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Legionellales; f__Legionellaceae; g__Legionella; s__Legionella pneumophila
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Legionellales; f__Legionellaceae; g__Legionella; s__Legionella pneumophila
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Legionellales; f__Legionellaceae; g__Legionella; s__Legionella pneumophila
NCBI Strain Identifiers SH135
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000008485.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.19%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 86
N50 Contigs 127,065 bp
Longest Contig 250,131 bp
Scaffold Count 80
N50 Scaffolds 132,258 bp
Longest Scaffold 250,131 bp
Genome Size 3,534,089 bp
Protein Count 3,196
Coding Density 87.85%
GC Percentage 38.20%
Ambiguous Bases N/A
GTDB representative GCA_000008485.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM158238v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03481706
Country China: Shanghai
Date 2016-3-8
Genbank Assembly Accession GCA_001582385.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Cooling tower water
Latitude Longitude None
Molecule Count N/A
CDS Count 3,226
Refseq Category na
Seq Rel Date 2016/03/08
Spanned Gaps 6
Species Taxid 446
SSU Count 1
Submitter National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Contr
Taxid 446
Total Gap Length 251
Translation Table 11
tRNA Count (total) 42
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LAYB00000000.1