Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers NTPn 43
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.71%
CheckM Contamination 0.29%
CheckM Strain Heterogeneity 33.33
5S Count 1
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 300
N50 Contigs 12,902 bp
Longest Contig 64,745 bp
Scaffold Count 296
N50 Scaffolds 12,915 bp
Longest Scaffold 64,745 bp
Genome Size 2,067,973 bp
Protein Count 2,196
Coding Density 86.87%
GC Percentage 39.81%
Ambiguous Bases 36
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM158180v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03964648
Country South Africa: Gauteng
Date 2016-3-7
Genbank Assembly Accession GCA_001581805.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source blood
Latitude Longitude 26 S 28 E
Molecule Count N/A
CDS Count 2,306
Refseq Category na
Seq Rel Date 2016/03/07
Spanned Gaps 4
Species Taxid 1313
SSU Count 1
Submitter National Institute for Communicable Diseases
Taxid 1313
Total Gap Length 167
Translation Table 11
tRNA Count (total) 24
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LJWN00000000.1