Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 13 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers NTPn 48
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 98.82%
CheckM Contamination 1.24%
CheckM Strain Heterogeneity 40.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 13
Contig Count 152
N50 Contigs 32,132 bp
Longest Contig 92,444 bp
Scaffold Count 146
N50 Scaffolds 32,132 bp
Longest Scaffold 92,444 bp
Genome Size 2,081,100 bp
Protein Count 2,142
Coding Density 86.42%
GC Percentage 39.58%
Ambiguous Bases 43
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM158174v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03964653
Country South Africa: Western Cape
Date 2016-3-7
Genbank Assembly Accession GCA_001581745.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source blood
Latitude Longitude 34 S 20 E
Molecule Count N/A
CDS Count 2,270
Refseq Category na
Seq Rel Date 2016/03/07
Spanned Gaps 6
Species Taxid 1313
SSU Count 1
Submitter National Institute for Communicable Diseases
Taxid 1313
Total Gap Length 284
Translation Table 11
tRNA Count (total) 17
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LJWR00000000.1