Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers NTPn 44
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 98.98%
CheckM Contamination 0.79%
CheckM Strain Heterogeneity 90.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 249
N50 Contigs 17,016 bp
Longest Contig 71,447 bp
Scaffold Count 245
N50 Scaffolds 17,162 bp
Longest Scaffold 71,447 bp
Genome Size 2,124,850 bp
Protein Count 2,191
Coding Density 86.65%
GC Percentage 39.83%
Ambiguous Bases 18
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM158169v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03964649
Country South Africa: Gauteng
Date 2016-3-7
Genbank Assembly Accession GCA_001581695.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source cerebrospinal fluid
Latitude Longitude 26 S 28 E
Molecule Count N/A
CDS Count 2,302
Refseq Category na
Seq Rel Date 2016/03/07
Spanned Gaps 4
Species Taxid 1313
SSU Count 1
Submitter National Institute for Communicable Diseases
Taxid 1313
Total Gap Length 221
Translation Table 11
tRNA Count (total) 42
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LJWO00000000.1