Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers NTPn 39
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.2%
CheckM Contamination 0.29%
CheckM Strain Heterogeneity 66.67
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 292
N50 Contigs 13,315 bp
Longest Contig 68,385 bp
Scaffold Count 288
N50 Scaffolds 13,668 bp
Longest Scaffold 68,385 bp
Genome Size 2,127,223 bp
Protein Count 2,242
Coding Density 86.92%
GC Percentage 39.85%
Ambiguous Bases 36
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM158163v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03964645
Country South Africa: Kwazulu-Natal
Date 2016-3-7
Genbank Assembly Accession GCA_001581635.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source blood
Latitude Longitude 29 S 31 E
Molecule Count N/A
CDS Count 2,310
Refseq Category na
Seq Rel Date 2016/03/07
Spanned Gaps 4
Species Taxid 1313
SSU Count 1
Submitter National Institute for Communicable Diseases
Taxid 1313
Total Gap Length 209
Translation Table 11
tRNA Count (total) 43
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LJWK00000000.1