Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers NTPn 30
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.6%
CheckM Contamination 0.21%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 178
N50 Contigs 22,793 bp
Longest Contig 73,226 bp
Scaffold Count 175
N50 Scaffolds 22,793 bp
Longest Scaffold 73,226 bp
Genome Size 2,140,068 bp
Protein Count 2,204
Coding Density 86.24%
GC Percentage 39.70%
Ambiguous Bases 14
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM158153v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03964638
Country South Africa: Gauteng
Date 2016-3-7
Genbank Assembly Accession GCA_001581535.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source cerebrospinal fluid
Latitude Longitude 26 S 28 E
Molecule Count N/A
CDS Count 2,347
Refseq Category na
Seq Rel Date 2016/03/07
Spanned Gaps 3
Species Taxid 1313
SSU Count 1
Submitter National Institute for Communicable Diseases
Taxid 1313
Total Gap Length 106
Translation Table 11
tRNA Count (total) 43
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LJWD00000000.1