GCF_001581475.1
Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 19 tRNAs
Genome Characteristics
CheckM Completeness 99.6%
CheckM Contamination 0.42%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 153
N50 Contigs 32,835 bp
Longest Contig 145,002 bp
Scaffold Count 151
N50 Scaffolds 32,835 bp
Longest Scaffold 145,002 bp
Genome Size 2,116,897 bp
Protein Count 2,167
Coding Density 86.21%
GC Percentage 39.59%
Ambiguous Bases 18
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM158147v1
Assembly Type na
Bioproject PRJNA224116
Biosample SAMN03964624
Country South Africa: Western Cape
Date 2016-03-07
Genbank Assembly Accession GCA_001581475.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Vitreous
Latitude Longitude 34 S 20 E
Molecule Count N/A
CDS Count 2,298
Refseq Category na
Seq Rel Date 2016/03/07
Spanned Gaps 2
Species Taxid 1313
SSU Count 3
Submitter National Institute for Communicable Diseases
Taxid 1313
Total Gap Length 141
Translation Table 11
tRNA Count (total) 42
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LJVQ00000000.1