Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers NTPn 28
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 98.37%
CheckM Contamination 0.36%
CheckM Strain Heterogeneity 66.67
5S Count 3
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 271
N50 Contigs 14,357 bp
Longest Contig 56,437 bp
Scaffold Count 261
N50 Scaffolds 14,912 bp
Longest Scaffold 56,437 bp
Genome Size 1,926,343 bp
Protein Count 2,017
Coding Density 86.66%
GC Percentage 39.91%
Ambiguous Bases 28
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM158145v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03964636
Country South Africa: Free State
Date 2016-3-7
Genbank Assembly Accession GCA_001581455.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source pleural fuid
Latitude Longitude 28 S 27 E
Molecule Count N/A
CDS Count 2,134
Refseq Category na
Seq Rel Date 2016/03/07
Spanned Gaps 10
Species Taxid 1313
SSU Count 1
Submitter National Institute for Communicable Diseases
Taxid 1313
Total Gap Length 438
Translation Table 11
tRNA Count (total) 42
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LJWB00000000.1