Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers NTPn 17
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.56%
CheckM Contamination 0.35%
CheckM Strain Heterogeneity 50.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 123
N50 Contigs 31,515 bp
Longest Contig 81,456 bp
Scaffold Count 116
N50 Scaffolds 33,347 bp
Longest Scaffold 81,456 bp
Genome Size 2,025,487 bp
Protein Count 2,059
Coding Density 86.03%
GC Percentage 39.77%
Ambiguous Bases 41
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM158139v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03964632
Country South Africa: Free State
Date 2016-3-7
Genbank Assembly Accession GCA_001581395.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source pleural fuid
Latitude Longitude 28 S 27 E
Molecule Count N/A
CDS Count 2,212
Refseq Category na
Seq Rel Date 2016/03/07
Spanned Gaps 7
Species Taxid 1313
SSU Count 1
Submitter National Institute for Communicable Diseases
Taxid 1313
Total Gap Length 396
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LJVY00000000.1