Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers NTPn 27
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 98.9%
CheckM Contamination 0.44%
CheckM Strain Heterogeneity 50.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 338
N50 Contigs 11,420 bp
Longest Contig 39,282 bp
Scaffold Count 333
N50 Scaffolds 11,920 bp
Longest Scaffold 39,282 bp
Genome Size 2,114,574 bp
Protein Count 2,243
Coding Density 87.16%
GC Percentage 39.87%
Ambiguous Bases 51
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM158116v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03964635
Country South Africa: Gauteng
Date 2016-3-7
Genbank Assembly Accession GCA_001581165.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source blood
Latitude Longitude 26 S 28 E
Molecule Count N/A
CDS Count 2,319
Refseq Category na
Seq Rel Date 2016/03/07
Spanned Gaps 5
Species Taxid 1313
SSU Count 1
Submitter National Institute for Communicable Diseases
Taxid 1313
Total Gap Length 287
Translation Table 11
tRNA Count (total) 43
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LJVM00000000.1