Clostridium_P perfringens
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Clostridiales; f__Clostridiaceae; g__Clostridium_P; s__Clostridium_P perfringens
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Clostridiaceae; g__Clostridium; s__Clostridium perfringens
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Clostridiaceae; g__Clostridium; s__Clostridium perfringens
NCBI Strain Identifiers JP838
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000013285.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 2.39%
CheckM Strain Heterogeneity 0.0
5S Count 9
16S Count 10
23S Count 10
tRNA Count 20
Contig Count 5
N50 Contigs 3,530,414 bp
Longest Contig 3,530,414 bp
Scaffold Count 5
N50 Scaffolds 3,530,414 bp
Longest Scaffold 3,530,414 bp
Genome Size 4,070,811 bp
Protein Count 3,788
Coding Density 83.36%
GC Percentage 27.94%
Ambiguous Bases 5
GTDB representative GCA_000013285.1
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM157978v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03377063
Country USA: Washington State
Date 2016-3-3
Genbank Assembly Accession GCA_001579785.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 5
CDS Count 3,700
Refseq Category na
Seq Rel Date 2016/03/03
Spanned Gaps 0
Species Taxid 1502
SSU Count 10
Submitter Ontario Veterinary College, University of Guelph
Taxid 1502
Total Gap Length 0
Translation Table 11
tRNA Count (total) 102
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None