Undefined name (Failed Quality Check)
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy Undefined (Failed Quality Check)
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Streptomycetales; f__Streptomycetaceae; g__Streptomyces; s__Streptomyces scabiei
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Streptomycetales; f__Streptomycetaceae; g__Streptomyces; s__Streptomyces scabiei
NCBI Strain Identifiers 96-06
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 91.78%
CheckM Contamination 1.72%
CheckM Strain Heterogeneity 50.0
5S Count 5
16S Count 6
23S Count 6
tRNA Count 20
Contig Count 1,173
N50 Contigs 9,944 bp
Longest Contig 100,071 bp
Scaffold Count 1,173
N50 Scaffolds 9,944 bp
Longest Scaffold 100,071 bp
Genome Size 9,023,059 bp
Protein Count 8,733
Coding Density 86.68%
GC Percentage 70.94%
Ambiguous Bases N/A
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM157968v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04438373
Country Canada: Ontario
Date 2016-03-03
Genbank Assembly Accession GCA_001579685.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 8,662
Refseq Category na
Seq Rel Date 2016/03/03
Spanned Gaps 0
Species Taxid 1930
SSU Count 6
Submitter University of Florida
Taxid 1930
Total Gap Length 0
Translation Table 11
tRNA Count (total) 73
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LSZY00000000.1