Streptococcus oralis_O
Isolate HQ 5S/16S/23S 17 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus oralis_O
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus oralis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus oralis
NCBI Strain Identifiers DD24
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 96.42%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 17
Contig Count 230
N50 Contigs 19,264 bp
Longest Contig 99,761 bp
Scaffold Count 29
N50 Scaffolds 822,929 bp
Longest Scaffold 878,360 bp
Genome Size 2,129,793 bp
Protein Count 2,074
Coding Density 83.02%
GC Percentage 40.79%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM157917v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04325051
Country Germany: Goettingen; German Primate Center
Date 2016-3-2
Genbank Assembly Accession GCA_001579175.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source oral cavity
Latitude Longitude None
Molecule Count N/A
CDS Count 2,144
Refseq Category na
Seq Rel Date 2016/03/02
Spanned Gaps 201
Species Taxid 1303
SSU Count 1
Submitter University of Kaiserslautern
Taxid 1303
Total Gap Length 38616
Translation Table 11
tRNA Count (total) 31
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LQZB00000000.1