Streptococcus oralis_Q
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus oralis_Q
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus oralis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus oralis
NCBI Strain Identifiers DD16
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 90.96%
CheckM Contamination 0.81%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 445
N50 Contigs 10,658 bp
Longest Contig 81,319 bp
Scaffold Count 139
N50 Scaffolds 565,661 bp
Longest Scaffold 574,870 bp
Genome Size 2,052,376 bp
Protein Count 1,997
Coding Density 78.57%
GC Percentage 41.19%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM157894v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04325028
Country Cote d Ivoire: Tai National Park
Date 2016-03-02
Genbank Assembly Accession GCA_001578945.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source fruit residues (memencylon)
Latitude Longitude None
Molecule Count N/A
CDS Count 2,109
Refseq Category na
Seq Rel Date 2016/03/02
Spanned Gaps 306
Species Taxid 1303
SSU Count 1
Submitter University of Kaiserslautern
Taxid 1303
Total Gap Length 126096
Translation Table 11
tRNA Count (total) 31
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LQOB00000000.1