Streptococcus oralis_J
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus oralis_J
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus oralis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus oralis
NCBI Strain Identifiers DD05
GTDB Type Material Designation not type material
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.07%
CheckM Contamination 0.73%
CheckM Strain Heterogeneity 25.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 70
N50 Contigs 100,035 bp
Longest Contig 277,272 bp
Scaffold Count 25
N50 Scaffolds 1,188,840 bp
Longest Scaffold 1,188,840 bp
Genome Size 1,965,030 bp
Protein Count 1,880
Coding Density 87.98%
GC Percentage 41.03%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM157870v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04324324
Country Germany: Frankfurt Zoo
Date 2016-3-2
Genbank Assembly Accession GCA_001578705.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source oral cavity
Latitude Longitude None
Molecule Count N/A
CDS Count 1,905
Refseq Category na
Seq Rel Date 2016/03/02
Spanned Gaps 45
Species Taxid 1303
SSU Count 1
Submitter University of Kaiserslautern
Taxid 1303
Total Gap Length 18664
Translation Table 11
tRNA Count (total) 41
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LQOG00000000.1