Bacteroides thetaiotaomicron
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__Bacteroides thetaiotaomicron
Filtered NCBI Taxonomy d__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__Bacteroides thetaiotaomicron
Unfiltered NCBI Taxonomy d__Bacteria; x__FCB group; x__Bacteroidetes/Chlorobi group; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__Bacteroides thetaiotaomicron
NCBI Strain Identifiers KLE1254
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000011065.1)
Genome Characteristics
CheckM Completeness 99.41%
CheckM Contamination 0.08%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 187
N50 Contigs 83,684 bp
Longest Contig 313,240 bp
Scaffold Count 108
N50 Scaffolds 143,966 bp
Longest Scaffold 460,951 bp
Genome Size 6,089,777 bp
Protein Count 4,794
Coding Density 89.90%
GC Percentage 43.04%
Ambiguous Bases N/A
GTDB representative GCA_000011065.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM157856v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04324905
Country None
Date 2016-3-2
Genbank Assembly Accession GCA_001578565.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source feces
Latitude Longitude None
Molecule Count N/A
CDS Count 4,790
Refseq Category na
Seq Rel Date 2016/03/02
Spanned Gaps 79
Species Taxid 818
SSU Count 1
Submitter The Genome Institute at Washington University
Taxid 818
Total Gap Length 7900
Translation Table 11
tRNA Count (total) 61
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LTDD00000000.1