Microcystis aeruginosa
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__Cyanobacteriales; f__Microcystaceae; g__Microcystis; s__Microcystis aeruginosa
Filtered NCBI Taxonomy d__Bacteria; p__Cyanobacteria; c__; o__Chroococcales; f__Microcystaceae; g__Microcystis; s__Microcystis aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; x__Cyanobacteria/Melainabacteria group; p__Cyanobacteria; x__Oscillatoriophycideae; o__Chroococcales; f__Microcystaceae; g__Microcystis; s__Microcystis aeruginosa; x__Microcystis aeruginosa NIES-88
NCBI Strain Identifiers NIES-88
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000010625.1)
Genome Characteristics
CheckM Completeness 99.45%
CheckM Contamination 0.84%
CheckM Strain Heterogeneity 50.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 262
N50 Contigs 35,996 bp
Longest Contig 107,851 bp
Scaffold Count 29
N50 Scaffolds 298,388 bp
Longest Scaffold 1,473,180 bp
Genome Size 5,263,219 bp
Protein Count 5,026
Coding Density 76.65%
GC Percentage 42.73%
Ambiguous Bases N/A
GTDB representative GCA_000010625.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM157807v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03329508
Country Japan: Lake Kawaguchi Yamanashi
Date 2016-3-1
Genbank Assembly Accession GCA_001578075.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source freshwater lake
Latitude Longitude 35.30 N 138.45 E
Molecule Count N/A
CDS Count 5,258
Refseq Category na
Seq Rel Date 2016/03/01
Spanned Gaps 233
Species Taxid 1126
SSU Count 1
Submitter University of Helsinki
Taxid 449441
Total Gap Length 167535
Translation Table 11
tRNA Count (total) 41
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JXYX00000000.1