Listeria monocytogenes
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Listeriaceae; g__Listeria; s__Listeria monocytogenes
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Listeriaceae; g__Listeria; s__Listeria monocytogenes
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Listeriaceae; g__Listeria; s__Listeria monocytogenes
NCBI Strain Identifiers CFSAN026603
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900187225.1)
Genome Characteristics
CheckM Completeness 99.45%
CheckM Contamination 0.46%
CheckM Strain Heterogeneity 33.33
5S Count 1
16S Count 2
23S Count 4
tRNA Count 20
Contig Count 88
N50 Contigs 504,392 bp
Longest Contig 631,233 bp
Scaffold Count 88
N50 Scaffolds 504,392 bp
Longest Scaffold 631,233 bp
Genome Size 2,891,655 bp
Protein Count 2,881
Coding Density 89.76%
GC Percentage 37.97%
Ambiguous Bases N/A
GTDB representative GCA_900187225.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name CFSAN026603_01.1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04414899
Country USA:NC
Date 2016-2-29
Genbank Assembly Accession GCA_001577965.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Irrigation water
Latitude Longitude None
Molecule Count N/A
CDS Count 2,925
Refseq Category na
Seq Rel Date 2016/02/29
Spanned Gaps 0
Species Taxid 1639
SSU Count 2
Submitter FDA/CFSAN
Taxid 1639
Total Gap Length 0
Translation Table 11
tRNA Count (total) 61
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LSPR00000000.1