Clostridioides difficile
Isolate HQ 5S/16S/23S 20 tRNAs
Genome Characteristics
CheckM Completeness 99.36%
CheckM Contamination 0.38%
CheckM Strain Heterogeneity 0.0
5S Count 11
16S Count 12
23S Count 12
tRNA Count 20
Contig Count 1
N50 Contigs 4,167,076 bp
Longest Contig 4,167,076 bp
Scaffold Count 1
N50 Scaffolds 4,167,076 bp
Longest Scaffold 4,167,076 bp
Genome Size 4,167,076 bp
Protein Count 3,702
Coding Density 82.47%
GC Percentage 28.82%
Ambiguous Bases 0
GTDB representative GCA_001077535.2
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM157779v1
Assembly Type na
Bioproject PRJNA224116
Biosample SAMN03332454
Country Canada: Ontario
Date 2016-02-29
Genbank Assembly Accession GCA_001577795.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool sample (feces)
Latitude Longitude 43.66 N 79.39 W
Molecule Count 1
CDS Count 3,779
Refseq Category na
Seq Rel Date 2016/02/29
Spanned Gaps 0
Species Taxid 1496
SSU Count 12
Submitter Canadian Science Centre for Human and Animal Health
Taxid 1496
Total Gap Length 0
Translation Table 11
tRNA Count (total) 89
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None