Clostridioides difficile
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Peptostreptococcales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile
NCBI Strain Identifiers 08ACD0030
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000438845.1)
Genome Characteristics
CheckM Completeness 99.36%
CheckM Contamination 0.38%
CheckM Strain Heterogeneity 0.0
5S Count 11
16S Count 12
23S Count 12
tRNA Count 20
Contig Count 1
N50 Contigs 4,167,076 bp
Longest Contig 4,167,076 bp
Scaffold Count 1
N50 Scaffolds 4,167,076 bp
Longest Scaffold 4,167,076 bp
Genome Size 4,167,076 bp
Protein Count 3,702
Coding Density 82.47%
GC Percentage 28.82%
Ambiguous Bases N/A
GTDB representative GCA_000438845.1
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM157779v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03332454
Country Canada: Ontario
Date 2016-2-29
Genbank Assembly Accession GCA_001577795.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool sample (feces)
Latitude Longitude 43.66 N 79.39 W
Molecule Count 1
CDS Count 3,754
Refseq Category na
Seq Rel Date 2016/02/29
Spanned Gaps 0
Species Taxid 1496
SSU Count 12
Submitter Canadian Science Centre for Human and Animal Health
Taxid 1496
Total Gap Length 0
Translation Table 11
tRNA Count (total) 89
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None