GCF_001576545.1
Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Genome Characteristics
CheckM Completeness 99.67%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 153
N50 Contigs 138,647 bp
Longest Contig 449,416 bp
Scaffold Count 143
N50 Scaffolds 138,647 bp
Longest Scaffold 449,416 bp
Genome Size 5,136,543 bp
Protein Count 4,862
Coding Density 87.50%
GC Percentage 50.70%
Ambiguous Bases 19
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM157654v1
Assembly Type na
Bioproject PRJNA224116
Biosample SAMN04334762
Country Germany
Date 2016-02-26
Genbank Assembly Accession GCA_001576545.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source mastitis
Latitude Longitude None
Molecule Count N/A
CDS Count 5,013
Refseq Category na
Seq Rel Date 2016/02/26
Spanned Gaps 10
Species Taxid 562
SSU Count 4
Submitter KOlimastIR
Taxid 562
Total Gap Length 2672
Translation Table 11
tRNA Count (total) 83
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LOPR00000000.1