Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers G39
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 91
N50 Contigs 124,314 bp
Longest Contig 277,972 bp
Scaffold Count 83
N50 Scaffolds 126,578 bp
Longest Scaffold 277,972 bp
Genome Size 4,846,990 bp
Protein Count 4,630
Coding Density 88.09%
GC Percentage 50.85%
Ambiguous Bases 11
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM157615v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04334757
Country Belgium
Date 2016-2-26
Genbank Assembly Accession GCA_001576155.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source mastitis
Latitude Longitude None
Molecule Count N/A
CDS Count 4,993
Refseq Category na
Seq Rel Date 2016/02/26
Spanned Gaps 8
Species Taxid 562
SSU Count 1
Submitter KOlimastIR
Taxid 562
Total Gap Length 1513
Translation Table 11
tRNA Count (total) 76
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LOPM00000000.1