Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers G313
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 3
23S Count 1
tRNA Count 20
Contig Count 80
N50 Contigs 284,734 bp
Longest Contig 519,141 bp
Scaffold Count 64
N50 Scaffolds 284,734 bp
Longest Scaffold 587,663 bp
Genome Size 4,914,251 bp
Protein Count 4,627
Coding Density 87.86%
GC Percentage 50.58%
Ambiguous Bases 6
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM157613v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04334751
Country United Kingdom: Scotland
Date 2016-2-26
Genbank Assembly Accession GCA_001576135.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source mastitis
Latitude Longitude None
Molecule Count N/A
CDS Count 5,005
Refseq Category na
Seq Rel Date 2016/02/26
Spanned Gaps 16
Species Taxid 562
SSU Count 6
Submitter KOlimastIR
Taxid 562
Total Gap Length 2797
Translation Table 11
tRNA Count (total) 72
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LOPG00000000.1