Escherichia flexneri
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers G138
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.89%
CheckM Contamination 0.25%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 158
N50 Contigs 72,753 bp
Longest Contig 194,804 bp
Scaffold Count 145
N50 Scaffolds 75,814 bp
Longest Scaffold 194,804 bp
Genome Size 4,693,077 bp
Protein Count 4,414
Coding Density 88.20%
GC Percentage 50.99%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM157583v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04334704
Country France
Date 2016-2-26
Genbank Assembly Accession GCA_001575835.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source mastitis
Latitude Longitude None
Molecule Count N/A
CDS Count 4,750
Refseq Category na
Seq Rel Date 2016/02/26
Spanned Gaps 13
Species Taxid 562
SSU Count 1
Submitter KOlimastIR
Taxid 562
Total Gap Length 1781
Translation Table 11
tRNA Count (total) 75
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LONL00000000.1