Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers G229
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 84
N50 Contigs 204,415 bp
Longest Contig 363,155 bp
Scaffold Count 80
N50 Scaffolds 204,415 bp
Longest Scaffold 363,155 bp
Genome Size 5,011,700 bp
Protein Count 4,722
Coding Density 87.59%
GC Percentage 50.61%
Ambiguous Bases 2
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM157555v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04334733
Country Finland
Date 2016-02-26
Genbank Assembly Accession GCA_001575555.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source mastitis
Latitude Longitude None
Molecule Count N/A
CDS Count 5,186
Refseq Category na
Seq Rel Date 2016/02/26
Spanned Gaps 4
Species Taxid 562
SSU Count 5
Submitter KOlimastIR
Taxid 562
Total Gap Length 810
Translation Table 11
tRNA Count (total) 79
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LOOO00000000.1