Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers G211
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 78
N50 Contigs 159,511 bp
Longest Contig 550,077 bp
Scaffold Count 68
N50 Scaffolds 171,755 bp
Longest Scaffold 550,077 bp
Genome Size 4,882,706 bp
Protein Count 4,610
Coding Density 87.42%
GC Percentage 50.51%
Ambiguous Bases 5
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM157545v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04334725
Country Israel
Date 2016-2-26
Genbank Assembly Accession GCA_001575455.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source mastitis
Latitude Longitude None
Molecule Count N/A
CDS Count 4,987
Refseq Category na
Seq Rel Date 2016/02/26
Spanned Gaps 10
Species Taxid 562
SSU Count 1
Submitter KOlimastIR
Taxid 562
Total Gap Length 18637
Translation Table 11
tRNA Count (total) 75
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LOOG00000000.1