Escherichia flexneri
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers G201
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.16%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 2
23S Count 1
tRNA Count 18
Contig Count 114
N50 Contigs 123,812 bp
Longest Contig 302,474 bp
Scaffold Count 108
N50 Scaffolds 123,812 bp
Longest Scaffold 302,474 bp
Genome Size 5,029,090 bp
Protein Count 4,839
Coding Density 87.98%
GC Percentage 50.57%
Ambiguous Bases 7
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM157537v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04334723
Country United Kingdom: Scotland
Date 2016-2-26
Genbank Assembly Accession GCA_001575375.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source mastitis
Latitude Longitude None
Molecule Count N/A
CDS Count 5,190
Refseq Category na
Seq Rel Date 2016/02/26
Spanned Gaps 6
Species Taxid 562
SSU Count 5
Submitter KOlimastIR
Taxid 562
Total Gap Length 1207
Translation Table 11
tRNA Count (total) 74
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LOOE00000000.1