Salmonella enterica
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
NCBI Strain Identifiers 09
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 3
tRNA Count 19
Contig Count 107
N50 Contigs 169,067 bp
Longest Contig 393,302 bp
Scaffold Count 107
N50 Scaffolds 169,067 bp
Longest Scaffold 393,302 bp
Genome Size 4,721,227 bp
Protein Count 4,474
Coding Density 87.65%
GC Percentage 52.16%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM157501v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04452392
Country Malaysia
Date 2016-2-25
Genbank Assembly Accession GCA_001575015.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source chicken
Latitude Longitude 2.9916816477515353 N 101.77386475726962 E
Molecule Count N/A
CDS Count 4,761
Refseq Category na
Seq Rel Date 2016/02/25
Spanned Gaps 0
Species Taxid 28901
SSU Count 1
Submitter University of Malaya
Taxid 28901
Total Gap Length 0
Translation Table 11
tRNA Count (total) 72
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LRVA00000000.1