Clostridium_F botulinum
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Clostridiales; f__Clostridiaceae; g__Clostridium_F; s__Clostridium_F botulinum
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Clostridiaceae; g__Clostridium; s__Clostridium botulinum
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Clostridiaceae; g__Clostridium; s__Clostridium botulinum
NCBI Strain Identifiers Walls 8G
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001276985.1)
Genome Characteristics
CheckM Completeness 99.31%
CheckM Contamination 3.22%
CheckM Strain Heterogeneity 100.0
5S Count 5
16S Count 1
23S Count 2
tRNA Count 19
Contig Count 65
N50 Contigs 119,519 bp
Longest Contig 288,740 bp
Scaffold Count 65
N50 Scaffolds 119,519 bp
Longest Scaffold 288,740 bp
Genome Size 4,008,651 bp
Protein Count 3,708
Coding Density 82.12%
GC Percentage 28.07%
Ambiguous Bases N/A
GTDB representative GCA_001276985.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM157366v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03779992
Country USA: Virginia
Date 2016-2-25
Genbank Assembly Accession GCA_001573665.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source crabs (environmental isolate)
Latitude Longitude None
Molecule Count N/A
CDS Count 3,769
Refseq Category na
Seq Rel Date 2016/02/25
Spanned Gaps 0
Species Taxid 1491
SSU Count 1
Submitter Northern Arizona University
Taxid 1491
Total Gap Length 0
Translation Table 11
tRNA Count (total) 56
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LFPF00000000.1