Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers CFSAN025105
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.62%
CheckM Contamination 0.64%
CheckM Strain Heterogeneity 16.67
5S Count 3
16S Count 4
23S Count 3
tRNA Count 20
Contig Count 246
N50 Contigs 99,647 bp
Longest Contig 212,331 bp
Scaffold Count 244
N50 Scaffolds 99,647 bp
Longest Scaffold 212,331 bp
Genome Size 5,786,066 bp
Protein Count 5,792
Coding Density 87.60%
GC Percentage 50.50%
Ambiguous Bases 14
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM157252v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04338475
Country USA
Date 2016-2-24
Genbank Assembly Accession GCA_001572525.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 6,222
Refseq Category na
Seq Rel Date 2016/02/24
Spanned Gaps 2
Species Taxid 562
SSU Count 4
Submitter FDA/CFSAN
Taxid 562
Total Gap Length 64
Translation Table 11
tRNA Count (total) 83
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LPZD00000000.1