Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers UC37
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.86%
CheckM Contamination 0.09%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 129
N50 Contigs 134,610 bp
Longest Contig 361,279 bp
Scaffold Count 61
N50 Scaffolds 356,818 bp
Longest Scaffold 724,948 bp
Genome Size 5,096,651 bp
Protein Count 4,802
Coding Density 87.75%
GC Percentage 50.62%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM157174v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04449842
Country Canada: Winnipeg
Date 2016-2-24
Genbank Assembly Accession GCA_001571745.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Ulcerative colitis patient gut tissue biopsy
Latitude Longitude 49.90 N 97.14 W
Molecule Count N/A
CDS Count 5,227
Refseq Category na
Seq Rel Date 2016/02/24
Spanned Gaps 68
Species Taxid 562
SSU Count 2
Submitter University of Toronto
Taxid 562
Total Gap Length 4042
Translation Table 11
tRNA Count (total) 74
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LRXW00000000.1